A Brief History Of Sciences

(Introduction copied from DBPedia): Wikipedia is the by far largest available encyclopedia on the Web. Wikipedia has the problem that its search capabilities are limited to full-text search, which only allows very limited access to this valuable knowledge-base.Semantic Web technologies enable expressive queries against structured information on the Web. The Semantic Web has the problem that there is not much RDF data online yet and that up-to-date terms and ontologies are missing for many application domains. The DBPedia project approaches both problems by extracting structured information from Wikipedia and by making this information available on the Semantic Web. A major feature of DBPedia is to enable sophisticated queries against Wikipedia using SPARQL. Extracting structured information from Wikipedia leads to quite astonishing query answering possibilities.

In February, the dbpedia dataset was available for download.

For example, here are the N3 statements about Francis Crick that were extracted from wikipeda with dbpedia.

<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/name> "Francis Crick" .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/image>        "FrancisHarryComptonCrick.jpg" .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/caption>      "Francis Harry Compton Crick" .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/birth_date>   "1916068"^^<http://www.w3.org/2001/XMLSchema#Date> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/birth_place>  <http://en.wikipedia.org/wiki/Weston_Favell> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/birth_place>  <http://en.wikipedia.org/wiki/Northamptonshire> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/birth_place>  <http://en.wikipedia.org/wiki/UK> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/residence>    <http://upload.wikimedia.org/wikipedia/commons/a/ae/Flag_of_the_United_Kingdom.svg> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/residence>    <http://en.wikipedia.org/wiki/UK> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/residence>    <http://upload.wikimedia.org/wikipedia/commons/a/a4/Flag_of_the_United_States.svg> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/residence>    <http://en.wikipedia.org/wiki/USA> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/nationality>  "[[Image:Flag_of_the_United_Kingdom.svg|20px|]]  [[England|English]]" .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/death_date>   "20040728"^^<http://www.w3.org/2001/XMLSchema#Date> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/death_place>  <http://en.wikipedia.org/wiki/San_Diego> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/death_place>  <http://en.wikipedia.org/wiki/California> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/death_place>  <http://en.wikipedia.org/wiki/USA> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/field>        <http://en.wikipedia.org/wiki/Biophysics> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/work_institution>     <http://en.wikipedia.org/wiki/Salk_Institute> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/alma_mater>   "[[University College London]][[University of Cambridge]]" .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/doctoral_advisor>     <http://en.wikipedia.org/wiki/Max_Perutz> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/doctoral_students>    "None" .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/known_for>    "[[DNA|DNA structure]], [[consciousness]]" .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://3ba.se/wikipedia/attributes/prizes>       "[[Image:Nobel.png|20px]] [[Nobel Prize for Physiology or Medicine|Nobel Prize]] (1962)" .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://en.wikipedia.org/wiki/Template:infobox_scientist> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://www.w3.org/1999/02/22-rdf-syntax-ns#label>        "Francis Crick" .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://en.wikipedia.org/wiki/Category:Nobel_laureates_in_Physiology_or_Medicine> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://en.wikipedia.org/wiki/Category:English_neuroscientists> .
<http://en.wikipedia.org/wiki/Francis_Crick>      <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://en.wikipedia.org/wiki/Category:English_humanists> .

Iv' been playing with this source of data to build a dynamic timeline of scientists. The person choosen was the one where I could find a date of birth/death (some people didn't have this information or the date was not parseable (e.g. "[[March 11]], [[1922]] ([[Istanbul]], [[Turkey]])") ord I only used the predicates that could be used to find the date. For example here are a few predicates that could be used to find the date of birth:

http://3ba.se/wikipedia/attributes/birth_date
http://3ba.se/wikipedia/attributes/birthdate
http://3ba.se/wikipedia/attributes/Birthdate
http://3ba.se/wikipedia/attributes/date_birth
http://3ba.se/wikipedia/attributes/datebirth
http://3ba.se/wikipedia/attributes/date_of_birth
http://3ba.se/wikipedia/attributes/dateofbirth
http://3ba.se/wikipedia/attributes/DateOfBirth
http://3ba.se/wikipedia/attributes/DATE_OF_BIRTH
http://en.wikipedia.org/wiki/Category:1945_births>
(...)

I also used relationships between persons that could be found in the database. e.g.:

<http://en.wikipedia.org/wiki/Hermann_Joseph_Muller>    <http://3ba.se/wikipedia/attributes/teachers>   <http://en.wikipedia.org/wiki/Thomas_Hunt_Morgan> .

The result is a java application called WikiStory.
It requires JAVA Webstart 1.6. You can use the following command line:

javaws http://www.urbigene.com/wikistory/wikistory.jnlp

Selecting one or more category will select all the people that belong to it.
Clicking on a person in the timeline will load the page from wikipedia.


The timeline can also be saved as a SVG picture. If you're using Firefox, you can see an example Here

See also:

http://www.wikitimescale.org/index.php
http://meta.wikimedia.org/wiki/EasyTimeline
http://www.futureswatch.org/Timeline.htm
http://www.todayinsci.com/
http://www.perseus.tufts.edu/
http://dandelife.com/
http://www.timelineindex.com/content/home.php








Pierre

Tips: Sending Batch Invitations to Nature-Network.

A few minutes ago, I was looking for an quick method to send batch invitations to join Nature Network to my colleagues. I found a solution using the cURL utility.

1. Open firefox



2. log in to Nature Network



3. the site stores a cookie called '_session_id' on your browser. Open your Cookie Panel: Tools -> Options -> Privacy -> Cookies". Note the value of the cookie _session_id associated to the site network.nature.com



4. use cURL to send the form.
   

   
    curl -L -b '_session_id=THE_VALUE_OF_YOUR_COOKIE' -d 'referral[name]=Name' -d 'referral[email]=nobody.nowhere@mycompagny.com' -d 'referral[message]=this is an invitation to another social network'  -d 'commit=send'  'http://network.nature.com/referrals/create?locality='
   

   
   
   the option -L is used to follow any http redirection, -b set a cookie, -d set a key/value from the original html form. You can automatize this process using a simple loop over your addresses.
   

This solution worked fine at the time I wrote this post.

Pierre

network.nature.com is alive

.
A quick post: it seems that the global scientific social network network.nature.com global (previously known as Nature Network Boston) is now alive. I created two groups Bioinformatics and Semantic Web for the Life Sciences.

Pierre