02 July 2014

Pushed today: verticalize , an everyday linux command to verticalize tab-delimited files

FYI: this morning, I pushed verticalize on github. Verticalize is an everyday simple command to 'verticalize' delimited files: https://github.com/lindenb/verticalize.

$ curl "https://raw.githubusercontent.com/ekg/vcflib/master/samples/sample.vcf" |\
  grep -vE "^##" |\
  verticalize

>>> 2
$1    #CHROM : 19
$2       POS : 111
$3        ID : .
$4       REF : A
$5       ALT : C
$6      QUAL : 9.6
$7    FILTER : .
$8      INFO : .
$9    FORMAT : GT:HQ
$10  NA00001 : 0|0:10,10
$11  NA00002 : 0|0:10,10
$12  NA00003 : 0/1:3,3
<<< 2

>>> 3
$1    #CHROM : 19
$2       POS : 112
$3        ID : .
$4       REF : A
$5       ALT : G
$6      QUAL : 10
$7    FILTER : .
$8      INFO : .
$9    FORMAT : GT:HQ
$10  NA00001 : 0|0:10,10
$11  NA00002 : 0|0:10,10
$12  NA00003 : 0/1:3,3
<<< 3



.

That's it,
Pierre

1 comment:

Ron Shigeta said...

love it - need better tools for columnar data files. hope its okay if i post some feature requests on github?