Showing posts with label friendfeed. Show all posts
Showing posts with label friendfeed. Show all posts

20 September 2009

From FriendFeed to Nucleic Acids Research.

Deepak Singh and Andrew Su have both already posted on their blog about it: I'm proud to be the second author of a paper published in the "Database Issue" of Nucleic Acids Research.

The Gene Wiki: community intelligence applied to human gene annotation

Jon W. Huss III, Pierre Lindenbaum, Michael Martone, Donabel Roberts, Angel Pizarro, Faramarz Valafar, John B. Hogenesch and Andrew I. Su

Nucleic Acids Research, doi:10.1093/nar/gkp760

What I really like about this paper is how the collaboration started: last year Andrew asked for some help on FriendFeed, the Life Scientists:



.. I sent a mail and said I could possibly help , "et voila" !
Citing Andrew: I'd also be remiss if I didn't also note the critical role online collaboration played in this effort. Of the seven coauthors on this paper, two I've met only once in real life, and two I've never met in person. We are spread over four cities, five organizations, and nine time zones. Initiating and executing this collaboration happened virtually entirely online, aided by the FriendFeed Life Scientists room and Molecular and Cellular Biology WikiProject at Wikipedia. It was an eye-opener in terms of how effective online collaboration can be done.

Andrew, thank you again :-)


Pierre

04 August 2009

A Treemap for FriendFeed

I've resurrected an old Treemap algorithm I described three years ago, and I've used it to plot the activity of the "Life Scientists Room" on FriendFeed.

The source of the packing algorithm is available here, and the source of the tool scanning FriendFeed is available here.

In the end, here is a clickable treemap of the top 'commentators' in the "Life Scientists Room" of FriendFeed:


Deepak SinghBill HookerNeil SaundersMaxineEric JainMr. GunnAttila CsordasCameron NeylonPaulo NuinJim HardyPierrePawel SzczesnyAndrew SuAndrew CleggBjörn BrembsSally ChurchBora ZivkovicGraham SteelIddo FriedbergEgon WillighagenSteve KochShirley WuChris LasherDonnie BerkholzAlexeyChris MillerAbhishek TiwariAndrew PerryDaniel MietchenDuncan HullJean-Claude BradleyPedro BeltraoRicardo VidalRajarshi GuhaChris CotsapasMichael NielsenMaureen'Mummi' ThorissonMichael KuhnBenjamin TsengNoah GrayKhader ShameerMartin FennerNtinoMichael BartonHope LemanRichard P GrantHeatherChris PatilDaniel SwanAllyson ListerMatthew ToddJan AertsdKPaul J. DavisMike ChelenNils ReintonEuanFrankBob O'HaraMickey SchaferimaboneheadRuchira S. DattaAnders NorgaardTodd HarrisgeneregJason StajichWalter JessenMatt WoodIan HolmesDaniel JurczakPaul BacchusjoergkurtwegnerThomas LembergerBrian Krueger - LabSpacesnovoseekWladimir LabeikovskyKevin ZAarthyJason WingetCesar SanchezJack H. PincusEnroHilarylauraJoe DunckleyMary CanadyLars Juhl JensenRoland KrauseChristina PikasYaroslav NikolaevHysell OviedoDaniel MacArthurtimsofarsoShawnBarbara DuckAnthony PhanZaki ManianNir LondonJo BrodieD0r0th34General KafkaAdam KrautNextBioHariMichael R. BernsteinOliver HofmannRichard AkermanChristopher HarrisIan YorkKevin D. White_alfSutee DeeNatBlairJoe FitzsimonsarekChrisJereBrad ChapmanMikaelarfonmarcinJohn DupuisTodd HoffJill O'NeillMitchell J Stanton-CookSimon CockellAndreas Maternsteffi suhrBerci MeskoPiotr ByziaAntony WilliamsdsbreakLisa GreenYann AbrahamKaitlin ThaneyBosco HoJason TsaiAJCannAlejandroLucas BrouwersCass JohnstonVictor / Mendeley TeamEthan GahngMelanieAndy MaloneySusan BeebeNealMackenzie CowellStephen CurryFrançois DongierColbygeorgeTom WalshAdrianoDavid Bradleyfidel ramirezAlexander KruelAlexander GriekspoorRicardo Almeidajean-francois GuilbertJohn CumbersDavid CaplanRichard KlancerCarl FulpAndrew LangClare DudmanCarlos Granier-PhelpsRickSung W. LimMitchell Tsaitag:LindsaymocostColin AshePeter BinfieldDaniel Brownj1mWilka HudsonTom TulliusKonrad FörstnerAndrew SpongJason MillerDavid AdamJeff HabigHenry GeePedro MatosnicefishfilmsNeil SwainstonRafael SidiJames WatsonStevenJake FudgeBettinaJordan MFossil HuntressArnaldo M PereirasuelibrarianWilliam MooreDarek KedraMassimo PintoAnil ThomasClaudia KoltzenburgAlan KodzasovDomCarey LumengMichael HabibIan TindaleDaniel LemireColin ArcherMadhu PandeyAnselm Levskayavictor_linYunusYAMANER(CITRIL)Matt LeiferThomas MailundKristen FortneyRoyKaren JamesChet AwesomelaserJason KellyJWSChris EdwardsJohn DelacruzMarcinThe NeurocriticDan FreemanAnthony SalvagnoWubin QuKol TregaskesA RoyDavid HC SoulLouis SimoneauThomas Patrick ChunaYuval LangerRishabh Mishra (p248)Andrew WarrenJim TillVedran RodicJillis ter HoveMathew A. KoenekerRebecca HolzdelagoyaChristianShannon McWeeneyexador23carolhAdrian Heilbutmad -Walt RupparKrishna MohanAllen DodsonTapio KulmalaMatthewrnaworldBrian HaugenDilip DandDean JohnsJohn MatherlyIan MulvanyJason WehmhoenerOlivia LovagAndrew WalkingshawSandeep GautamTad, Anti-ImmanentizerHeather PiwowarJohn MajorGENiEChristopher GranadeSasha Kovaliov = ♂♥♫☺NashPeter MurrayFergus GallagherChris LoftTye ArnettGinger Campbell, MDPhilAlejandro MontenegroOlaDan Morrill AKA TechwagAndrew LemonPepe JGBill AndersonDave JohnstonscientifkSteveBioJobBlogSam JackMicah WittmanaliebBruno C. VellutiniEmrah Doğan (winmaker)Matthew D. SmithJo BadgeBronwen DekkerHans-Martin WillRajeshVincent RacanielloDaveJoe BonnerpostlinearityCraig RowellMiss ElleMatthew DeVries© D/\\/IIID ℠ ®MarkBranwen HideTyson KeyEric MiltschRoberto BoniniJohn DuffChris SuspectPatricia F. AndersonFergus GallagherKostis MamassisnossenigmaRob DayJamie McQuayKMSSteve LevinDanielle FongGregg CameronDave BridgesLiz SladeMatt Harwoodcheranfriendfeed.com/walshtpAngela HamiltonvijayalfcoMeryn StolGladstoneJoel BennettMounir ErramiNaz DemirelhalwaWhitney HoffmanKyle WellerChristyivananderssonPeter DavenportRoderic PageTony RamosDave LuntEric BardesRussell WagnerLindsey Dragun/لندزي تنينRobert ScobleJason HoytJoan Koerber-WalkerMickey KosloffPeter AnsellThomas SharptonAbby MartinKubkeJeroen Van GoeyAlex CovicOpen Science InformationJasonRob SchonbergerBrian ReidDGentryRusty BishopChristopher DyerJack PowersFrank BruhnsMarian SiwiakKen MorleyKevin GambleRichard C YehFFing Enigma (aka Tina)TanathMichael FidlerTom TubbsWobblerSarahSteJulesRich MeiselɛƶqʋɛӽBrian Bishoperic silbersteinDawnJonJeffJeffraChris LeonardPeter MillerCaleb ElstonSebastianDhanuPeter MenzelLane RappAmir Moghaddamzephyrlily


Two other maps: here and here.

That's it

Pierre

30 January 2009

Bravo !! Microblogging the ISMB: A New Approach to Conference Reporting

Microblogging the ISMB: A New Approach to Conference Reporting

Neil Saunders, Pedro Beltrão, Lars Jensen, Daniel Jurczak, Roland Krause, Michael Kuhn, Shirley Wu
PLoS Comput Biol 5(1): e1000263. doi:10.1371/journal.pcbi.1000263.

Hey ! I know the authors of this paper !! :-)
I personally congratulate them !

Follow them/me/us/the biogang on FriendFeed !