Annozilla
Today I tested annozilla, a Firefox extension used to create and share annotations about web sites. Installation of the extension for firefox 1.5 was really fast and simple. Then you need a server that will store your annotations. The w3c provides a free one for testing at http://annotest.w3.org/access.
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I'm still missing some points: how can I add a new type of annotation (comment, explanation,example, but I'd like to see cellular component, interaction, etc...). Moreover, an annotation is a free-text (with HTML) which may be also hard to analyse...
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