Showing posts with label go. Show all posts
Showing posts with label go. Show all posts
09 January 2013

A XML schema (xsd) for GeneOntology

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The GeneOntology can be downloaded as a RDF/XML file from http://archive.geneontology.org/latest-termdb/go_daily-termdb.rdf-xml.gz . Althou...
06 April 2012

Indexing the content of Gene Ontology with apache SOLR

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Via Wikipedia: " Solr ( http://lucene.apache.org/solr/ ) is an open source enterprise search platform from the Apache Lucene project...
4 comments:
31 January 2012

Inside the Variation Toolkit: Tools for Gene Ontology

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GeneOntologyDbManager is a C++ tool that is part of my experimental Variation Toolkit . This program is a set of tools for GeneOntology , ...
21 September 2010

Trees in Mongodb, my notebook with Gene Ontology

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In the current post I've loaded the Gene Ontology into MongoDB and played with the tree structure of the database: Loading GeneOntolog...
29 May 2010

From mRNA to GO

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In this post , I've just copied the solutions I gave on http://biostar.stackexchange.com/ for the following problem: "How do I do ...
23 February 2010

A Mysql user defined function (UDF) for Gene Ontology (GO)

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In this post I'll create a Mysql Defined function (UDF) answering if a defined GO term is a descendant of another term. This post is n...
21 February 2009

Genes for Translation mapped on a Hilbert Curve

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In this post I describe how I mapped a list of genes involved in the Translational process on a Hilbert Curve . This post was mostly ins...
3 comments:
23 January 2008

Introduction of new relationship types in GO

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FYI: via the GO-friends mailing list . We are pleased to announce that The Gene Ontology Consortium will introduce three new relationship ty...
25 May 2007

Public Gene Ontology MySQL Mirror Now Available

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Via the Go newsletter . A public Gene Ontology MySQL mirror at the EBI now offers a remote connection to a regularly updated mirror of the ...