(Note: during the process of writing the new pages in wikipedia, a few articles have been proposed for deletion for notability reasons: I din't fight against the choise of the WP editors).
Articles in category: "Biological database"
SPARQL
List the biological databases.PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX dbpedia: <http://dbpedia.org/ontology/> SELECT ?title ?uri WHERE { ?uri a dbpedia:BiologicalDatabase . OPTIONAL { ?uri dbpedia:title ?title. } } ORDER By ?uri
Result:
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | title | uri | ======================================================================================================================================================================================================== | "3did"@en | <http://dbpedia.org/resource/3did> | | "ABCdb"@en | <http://dbpedia.org/resource/ABCdb> | | "AREsite"@en | <http://dbpedia.org/resource/AREsite> | | "AlloSteric Database"@en | <http://dbpedia.org/resource/ASD_%28database%29> | | "AgBase"@en | <http://dbpedia.org/resource/AgBase> | | "Allele frequency net"@en | <http://dbpedia.org/resource/Allele_frequency_net_database> | | "ASTD"@en | <http://dbpedia.org/resource/Alternative_splicing_and_transcript_diversity_database> | | "ASAP"@en | <http://dbpedia.org/resource/Alternative_splicing_annotation_project> | | "AmoebaDB"@en | <http://dbpedia.org/resource/AmoebaDB> | | "ArachnoServer"@en | <http://dbpedia.org/resource/ArachnoServer> | | "ArtadeDB"@en | <http://dbpedia.org/resource/Artade> | | "ASPicDB"@en | <http://dbpedia.org/resource/AspicDB> | | "The Autophagy Database"@en | <http://dbpedia.org/resource/Autophagy_database> | | "BGMUT"@en | <http://dbpedia.org/resource/BGMUT> | | "BISC"@en | <http://dbpedia.org/resource/BISC_%28database%29> | | "BRENDA"@en | <http://dbpedia.org/resource/BRENDA> | | "The BRENDA Tissue Ontology (BTO)"@en | <http://dbpedia.org/resource/BRENDA_tissue_ontology> | | | <http://dbpedia.org/resource/BindingDB> | | "Bio2RDF"@en | <http://dbpedia.org/resource/Bio2RDF> | | "BioGRID"@en | <http://dbpedia.org/resource/BioGRID> | | "BioModels Database"@en | <http://dbpedia.org/resource/BioModels_Database> | | "BSDB"@en | <http://dbpedia.org/resource/Biomolecule_stretching_database> | | "Bovine Genome Database"@en | <http://dbpedia.org/resource/Bovine_genome_database> | | "BriX"@en | <http://dbpedia.org/resource/Brix_%28database%29> | | "CADgene"@en | <http://dbpedia.org/resource/CADgene> | | "CATH"@en | <http://dbpedia.org/resource/CATH> | | "CLIPZ:"@en | <http://dbpedia.org/resource/CLIPZ> | | "COSMIC"@en | <http://dbpedia.org/resource/COSMIC_cancer_database> | | "CaSNP"@en | <http://dbpedia.org/resource/CaSNP> | | "CancerResource:"@en | <http://dbpedia.org/resource/CancerResource> | | "cBARBEL"@en | <http://dbpedia.org/resource/Catfish_genome_database> | | "CCDB"@en | <http://dbpedia.org/resource/Cervical_cancer_gene_database> | | | <http://dbpedia.org/resource/ChEBI> | | | <http://dbpedia.org/resource/ChEMBL> | | "ChemProt"@en | <http://dbpedia.org/resource/ChemProt> | | "ChimerDB"@en | <http://dbpedia.org/resource/ChimerDB> | | "MDS_IES_DB"@en | <http://dbpedia.org/resource/Ciliate_MDS/IES_database> | | "Ciona intestinalis protein database"@en | <http://dbpedia.org/resource/Ciona_intestinalis_protein_database> | | "ACLAME"@en | <http://dbpedia.org/resource/Classification_of_mobile_genetic_elements> | | "COMBREX: COMputational BRidges to EXperiments"@en | <http://dbpedia.org/resource/Combrex> | | "CAMERA"@en | <http://dbpedia.org/resource/Community_Cyberinfrastructure_for_Advanced_Marine_Microbial_Ecology_Research_and_Analysis> | | "CORG"@en | <http://dbpedia.org/resource/Comparative_regulatory_genomics_database> | | "CPLA"@en | <http://dbpedia.org/resource/Compendium_of_protein_lysine_acetylation> | | "Conformational dynamics data bank"@en | <http://dbpedia.org/resource/Conformational_dynamics_data_bank> | | "ConsensusPathDB"@en | <http://dbpedia.org/resource/ConsensusPathDB> | | "CDD"@en | <http://dbpedia.org/resource/Conserved_domain_database> | | "DAnCER"@en | <http://dbpedia.org/resource/DAnCER_%28database%29> | | "DBASS3 and DBASS5"@en | <http://dbpedia.org/resource/DBASS3/5> | | "DIMA"@en | <http://dbpedia.org/resource/DIMA_%28database%29> | | "DNA Data Bank of Japan"@en | <http://dbpedia.org/resource/DNA_Data_Bank_of_Japan> | | "PCDB"@en | <http://dbpedia.org/resource/Database_of_protein_conformational_diversity> | | "dbCRID"@en | <http://dbpedia.org/resource/DbCRID> | | "dbDNV"@en | <http://dbpedia.org/resource/DbDNV> | | "dbSNP"@en | <http://dbpedia.org/resource/DbSNP> | | "DiProDB: a database for dinucleotide properties."@en | <http://dbpedia.org/resource/DiProDB> | | "dictyBase"@en | <http://dbpedia.org/resource/DictyBase> | | "DOMINE"@en | <http://dbpedia.org/resource/Domine_Database> | | "DroID"@en | <http://dbpedia.org/resource/Droid_%28database%29> | | "ECRbase"@en | <http://dbpedia.org/resource/ECRbase> | | "ECgene"@en | <http://dbpedia.org/resource/ECgene> | | "EDAS."@en | <http://dbpedia.org/resource/EDAS> | | "EMAGE"@en | <http://dbpedia.org/resource/EMAGE> | | "EMDataBank.org"@en | <http://dbpedia.org/resource/EM_Data_Bank> | | "ENCODE"@en | <http://dbpedia.org/resource/ENCODE> | | "EcoCyc"@en | <http://dbpedia.org/resource/EcoCyc> | | "Effective-"@en | <http://dbpedia.org/resource/Effective_%28database%29> | | "The Ensembl genome database project."@en | <http://dbpedia.org/resource/Ensembl> | | "EID"@en | <http://dbpedia.org/resource/Exon-intron_database> | | "ExtraTrain"@en | <http://dbpedia.org/resource/ExtraTrain> | | "FANTOM"@en | <http://dbpedia.org/resource/FANTOM> | | "FINDbase"@en | <http://dbpedia.org/resource/FINDbase> | | "FREP"@en | <http://dbpedia.org/resource/FREP> | | "FishBase"@en | <http://dbpedia.org/resource/FishBase> | | "FlyFactorSurvey"@en | <http://dbpedia.org/resource/FlyFactorSurvey> | | "Full-parasites"@en | <http://dbpedia.org/resource/Full-parasites> | | "FESD"@en | <http://dbpedia.org/resource/Functional_element_SNPs_database> | | "FGDB"@en | <http://dbpedia.org/resource/Fusarium_graminearum_genome_database> | | "GISSD"@en | <http://dbpedia.org/resource/GISSD> | | "GPnotebook"@en | <http://dbpedia.org/resource/GPnotebook> | | "GPCRDB"@en | <http://dbpedia.org/resource/G_protein-coupled_receptors_database> | | "GenBank"@en | <http://dbpedia.org/resource/GenBank> | | "Genetic codes"@en | <http://dbpedia.org/resource/Genetic_codes_%28database%29> | | "GlycomeDB"@en | <http://dbpedia.org/resource/GlycomeDB> | | "GyDB of mobile genetic elements:"@en | <http://dbpedia.org/resource/Gypsy_%28database%29> | | "The H-Invitational"@en | <http://dbpedia.org/resource/H-Invitational> | | "HGNC"@en | <http://dbpedia.org/resource/HUGO_Gene_Nomenclature_Committee> | | "HitPredict"@en | <http://dbpedia.org/resource/HitPredict> | | "HOLLYWOOD"@en | <http://dbpedia.org/resource/Hollywood_%28database%29> | | "HUMHOT"@en | <http://dbpedia.org/resource/HumHot> | | "H-DBAS"@en | <http://dbpedia.org/resource/Human-transcriptome_database_for_alternative_splicing> | | "Hymenoptera Genome Database"@en | <http://dbpedia.org/resource/Hymenoptera_genome_database> | | "IGRhCellID"@en | <http://dbpedia.org/resource/IGRhCellID> | | "IUPHAR-DB."@en | <http://dbpedia.org/resource/IUPHAR_%28database%29> | | "InSatDb"@en | <http://dbpedia.org/resource/InSatDb> | | | <http://dbpedia.org/resource/Indian_Genetic_Disease_Database_%28IGDD%29> | | "InterPro"@en | <http://dbpedia.org/resource/InterPro> | | "INTERFEROME"@en | <http://dbpedia.org/resource/Interferome> | | "IKMC: International Knockout Mouse Consortium"@en | <http://dbpedia.org/resource/International_Knockout_Mouse_Consortium> | | "Intronerator"@en | <http://dbpedia.org/resource/Intronerator> | | "ISfinder"@en | <http://dbpedia.org/resource/Isfinder> | | "Islander"@en | <http://dbpedia.org/resource/Islander_%28database%29> | | "IsoBase"@en | <http://dbpedia.org/resource/IsoBase> | | "KEGG"@en | <http://dbpedia.org/resource/KEGG> | | "KUPS"@en | <http://dbpedia.org/resource/KUPS_%28database%29> | | "KaPPA-View4"@en | <http://dbpedia.org/resource/KaPPA-View4> | | "L1Base"@en | <http://dbpedia.org/resource/L1Base> | | "Laminin database"@en | <http://dbpedia.org/resource/Laminin_database> | | "LarvalBase"@en | <http://dbpedia.org/resource/LarvalBase> | | "lncRNAdb"@en | <http://dbpedia.org/resource/LncRNAdb> | | "LocDB"@en | <http://dbpedia.org/resource/LocDB> | | "mESAdb"@en | <http://dbpedia.org/resource/MESAdb> | | "MICdb"@en | <http://dbpedia.org/resource/MICdb> | | "MPromDb"@en | <http://dbpedia.org/resource/Mammalian_promoter_database> | | "MatrixDB, the extracellular matrix interaction database."@en | <http://dbpedia.org/resource/MatrixDB> | | "MetaCyc"@en | <http://dbpedia.org/resource/MetaCyc> | | "MethDB-"@en | <http://dbpedia.org/resource/MethDB> | | "miRBase"@en | <http://dbpedia.org/resource/MiRBase> | | "miRGator"@en | <http://dbpedia.org/resource/MiRGator> | | "miRTarBase"@en | <http://dbpedia.org/resource/MiRTarBase> | | "ModBase"@en | <http://dbpedia.org/resource/ModBase> | | "The Mouse Genome Database"@en | <http://dbpedia.org/resource/Mouse_Genome_Database> | | "The mouse Gene Expression Database"@en | <http://dbpedia.org/resource/Mouse_gene_expression_database> | | "MIPS"@en | <http://dbpedia.org/resource/Munich_Information_Center_for_Protein_Sequences> | | "NCBI Epigenomics"@en | <http://dbpedia.org/resource/NCBI_Epigenomics> | | "PID"@en | <http://dbpedia.org/resource/NCI-Nature_Pathway_Interaction_Database> | | "NGSmethDB"@en | <http://dbpedia.org/resource/NGSmethDB> | | "neXtProt"@en | <http://dbpedia.org/resource/NeXtProt> | | "NetPath"@en | <http://dbpedia.org/resource/Netpath> | | "NeuroLex"@en | <http://dbpedia.org/resource/NeuroLex> | | "Non-B DB"@en | <http://dbpedia.org/resource/Non-B_database> | | "NPRD"@en | <http://dbpedia.org/resource/Nucleosome_positioning_region_database> | | "OMPdb"@en | <http://dbpedia.org/resource/OMPdb> | | "TOPSAN"@en | <http://dbpedia.org/resource/Open_protein_structure_annotation_network> | | "ODB"@en | <http://dbpedia.org/resource/Operon_database> | | "OriDB"@en | <http://dbpedia.org/resource/OriDB> | | "Orientations of Proteins in Membranes"@en | <http://dbpedia.org/resource/Orientations_of_Proteins_in_Membranes_database> | | "OrthoDB"@en | <http://dbpedia.org/resource/OrthoDB> | | "OMA"@en | <http://dbpedia.org/resource/Orthologous_MAtrix> | | "P2CS"@en | <http://dbpedia.org/resource/P2CS> | | "PANDIT"@en | <http://dbpedia.org/resource/PANDIT_%28database%29> | | "PCRPi-DB"@en | <http://dbpedia.org/resource/PCRPi-DB> | | "PDBSum"@en | <http://dbpedia.org/resource/PDBsum> | | "PROSITE"@en | <http://dbpedia.org/resource/PROSITE> | | "PSORTdb"@en | <http://dbpedia.org/resource/PSORTdb> | | "ParameciumDB"@en | <http://dbpedia.org/resource/ParameciumDB> | | "Pathway Commons"@en | <http://dbpedia.org/resource/Pathway_commons> | | "Patome"@en | <http://dbpedia.org/resource/Patome> | | "PREX"@en | <http://dbpedia.org/resource/Peroxiredoxin_classification_index> | | "Pfam"@en | <http://dbpedia.org/resource/Pfam> | | "PhEVER"@en | <http://dbpedia.org/resource/PhEVER> | | "PHOSIDA"@en | <http://dbpedia.org/resource/Phosida> | | "Phospho.ELM"@en | <http://dbpedia.org/resource/Phospho.ELM> | | "Phospho3D"@en | <http://dbpedia.org/resource/Phospho3D> | | "PhylomeDB"@en | <http://dbpedia.org/resource/PhylomeDB> | | "PlasmoDB"@en | <http://dbpedia.org/resource/PlasmoDB> | | "PmiRKB"@en | <http://dbpedia.org/resource/PmiRKB> | | "PolyQ"@en | <http://dbpedia.org/resource/PolyQ_%28database%29> | | "PolymiRTS"@en | <http://dbpedia.org/resource/PolymiRTS> | | "PSSRdb"@en | <http://dbpedia.org/resource/Polymorphic_simple_sequence_repeats_database> | | "ProSAS"@en | <http://dbpedia.org/resource/ProSAS> | | "ProtCID"@en | <http://dbpedia.org/resource/ProtCID> | | "PRIDB"@en | <http://dbpedia.org/resource/Protein-RNA_interface_database> | | "The Protein Data Bank."@en | <http://dbpedia.org/resource/Protein_Data_Bank> | | "PCDDB"@en | <http://dbpedia.org/resource/Protein_circular_dichroism_data_bank> | | "Pseudogene.org"@en | <http://dbpedia.org/resource/Pseudogene_%28database%29> | | "Pseudomonas Genome Database"@en | <http://dbpedia.org/resource/Pseudomonas_genome_database> | | "PubChem"@en | <http://dbpedia.org/resource/PubChem> | | "PubMed"@en | <http://dbpedia.org/resource/PubMed> | | "REDfly"@en | <http://dbpedia.org/resource/REDfly> | | "REPAIRtoire"@en | <http://dbpedia.org/resource/REPAIRtoire> | | "RIKEN integrated database of mammals."@en | <http://dbpedia.org/resource/RIKEN_integrated_database_of_mammals> | | "RBPDB"@en | <http://dbpedia.org/resource/RNA-binding_protein_database> | | "RNA helicase database."@en | <http://dbpedia.org/resource/RNA_helicase_database> | | "RNAMDB"@en | <http://dbpedia.org/resource/RNA_modification_database> | | "Reactome: a database of reactions, pathways and biological processes."@en | <http://dbpedia.org/resource/Reactome> | | "REBASE"@en | <http://dbpedia.org/resource/Rebase_%28database%29> | | "RECODE"@en | <http://dbpedia.org/resource/Recode_%28database%29> | | "Refseq"@en | <http://dbpedia.org/resource/RefSeq> | | "RegPhos"@en | <http://dbpedia.org/resource/RegPhos> | | "RegTransBase"@en | <http://dbpedia.org/resource/RegTransBase> | | "RegulonDB"@en | <http://dbpedia.org/resource/RegulonDB> | | "RepTar"@en | <http://dbpedia.org/resource/RepTar_%28database%29> | | "RetrOryza"@en | <http://dbpedia.org/resource/RetrOryza> | | "Rfam"@en | <http://dbpedia.org/resource/Rfam> | | "S/MARt DB"@en | <http://dbpedia.org/resource/S/MARt> | | "STRING"@en | <http://dbpedia.org/resource/STRING> | | "SUPERFAMILY"@en | <http://dbpedia.org/resource/SUPERFAMILY> | | "SeaLifeBase"@en | <http://dbpedia.org/resource/SeaLifeBase> | | "SMART"@en | <http://dbpedia.org/resource/Simple_Modular_Architecture_Research_Tool> | | "SNPSTR"@en | <http://dbpedia.org/resource/Snptstr_%28database%29> | | "SPIKE"@en | <http://dbpedia.org/resource/Spike_%28database%29> | | "SpliceInfo"@en | <http://dbpedia.org/resource/SpliceInfo> | | "StarBase"@en | <http://dbpedia.org/resource/StarBase_%28database%29> | | "SCLD"@en | <http://dbpedia.org/resource/Stem_cell_lineage_database> | | "STRBase"@en | <http://dbpedia.org/resource/Strbase> | | "SAHG"@en | <http://dbpedia.org/resource/Structure_atlas_of_human_genome> | | "SuperSweet"@en | <http://dbpedia.org/resource/SuperSweet> | | "SGDB"@en | <http://dbpedia.org/resource/Synthetic_gene_database> | | "TIARA"@en | <http://dbpedia.org/resource/TIARA_%28database%29> | | "The TIGR Plant Repeat Databases"@en | <http://dbpedia.org/resource/TIGR_plant_repeat_database> | | "TIGR Plant Transcript Assemblies database."@en | <http://dbpedia.org/resource/TIGR_plant_transcript_assembly_database> | | "TMPad"@en | <http://dbpedia.org/resource/TMPad> | | "tRNADB"@en | <http://dbpedia.org/resource/TRNADB> | | "TRDB-"@en | <http://dbpedia.org/resource/Tandem_repeats_database> | | "TassDB"@en | <http://dbpedia.org/resource/TassDB> | | "TcoF-DB"@en | <http://dbpedia.org/resource/TcoF-DB> | | "ThYme"@en | <http://dbpedia.org/resource/ThYme_%28database%29> | | "TADB"@en | <http://dbpedia.org/resource/Toxin-antitoxin_database> | | "TRIP"@en | <http://dbpedia.org/resource/Transient_receptor_potential_channel-interacting_protein_database> | | "TranspoGene and microTranspoGene"@en | <http://dbpedia.org/resource/Transpogene> | | "TreeFam"@en | <http://dbpedia.org/resource/TreeFam> | | "U12DB"@en | <http://dbpedia.org/resource/U12_intron_database> | | "The UCSC Genome Browser"@en | <http://dbpedia.org/resource/UCSC_Genome_Browser> | | "UCbase & miRfunc"@en | <http://dbpedia.org/resource/UCbase> | | "UKPMC"@en | <http://dbpedia.org/resource/UK_PubMed_Central> | | "UTRdb and UTRsite"@en | <http://dbpedia.org/resource/UTRdb> | | "UTRome"@en | <http://dbpedia.org/resource/UTRome> | | "UgMicroSatdb"@en | <http://dbpedia.org/resource/UgMicroSatdb> | | "UniGene"@en | <http://dbpedia.org/resource/UniGene> | | "UniPROBE"@en | <http://dbpedia.org/resource/UniPROBE> | | "UniProt"@en | <http://dbpedia.org/resource/UniProt> | | "UniVec"@en | <http://dbpedia.org/resource/Univec> | | "VISTA Enhancer Browser"@en | <http://dbpedia.org/resource/VISTA_%28comparative_genomics%29> | | "VnD"@en | <http://dbpedia.org/resource/Variations_and_drugs_database> | | "VectorDB"@en | <http://dbpedia.org/resource/VectorDB> | | "ViralZon"@en | <http://dbpedia.org/resource/ViralZone> | | "VKCDB"@en | <http://dbpedia.org/resource/Voltage-gated_potassium_channel_database> | | "WebGeSTer DB"@en | <http://dbpedia.org/resource/WebGeSTer> | | "WormBase"@en | <http://dbpedia.org/resource/WormBase> | | "YPA"@en | <http://dbpedia.org/resource/Yeast_promoter_atlas> | | "YEASTRACT"@en | <http://dbpedia.org/resource/Yeastract> | | | <http://dbpedia.org/resource/ZINC_database> | | "ZFIN"@en | <http://dbpedia.org/resource/Zebrafish_Information_Network> | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
List the biological databases in the category "Systems Biology"
SPARQL
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX dbpedia: <http://dbpedia.org/ontology/> SELECT ?title ?description ?uri WHERE { ?uri a dbpedia:BiologicalDatabase . ?uri <http://purl.org/dc/terms/subject> <http://dbpedia.org/resource/Category:Systems_biology> . OPTIONAL { ?uri <http://dbpedia.org/property/title> ?title. } OPTIONAL { ?uri <http://dbpedia.org/property/description> ?description . } } ORDER By ?title
Results:
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | title | description | uri | ====================================================================================================================================================================================================================================== | "BISC"@en | "Protein–protein interaction database linking structural biology with functional genomics"@en | <http://dbpedia.org/resource/BISC_%28database%29> | | "BioGRID"@en | "interaction data."@en | <http://dbpedia.org/resource/BioGRID> | | "BioModels Database"@en | "A database for storing, exchanging and retrieving published quantitative models of biological interest."@en | <http://dbpedia.org/resource/BioModels_Database> | | "ChemProt"@en | "disease chemical biology database."@en | <http://dbpedia.org/resource/ChemProt> | | "ConsensusPathDB"@en | "human functional interaction networks."@en | <http://dbpedia.org/resource/ConsensusPathDB> | | "DIMA"@en | "predicted and known interactions between protein domains"@en | <http://dbpedia.org/resource/DIMA_%28database%29> | | "HitPredict"@en | "quality assessed protein-protein interactions in nine species."@en | <http://dbpedia.org/resource/HitPredict> | | "KEGG"@en | "The KEGG resource for deciphering the genome."@en | <http://dbpedia.org/resource/KEGG> | | "KUPS"@en | "datasets of interacting and non-interacting protein pairs with associated attributions."@en | <http://dbpedia.org/resource/KUPS_%28database%29> | | "PID"@en | "Pathway Interaction Database."@en | <http://dbpedia.org/resource/NCI-Nature_Pathway_Interaction_Database> | | "Pathway Commons"@en | "biological pathways."@en | <http://dbpedia.org/resource/Pathway_commons> | | "ProtCID"@en | "interactions of homologous proteins in multiple crystal forms."@en | <http://dbpedia.org/resource/ProtCID> | | "REPAIRtoire"@en | <http://dbpedia.org/resource/DNA_repair> | <http://dbpedia.org/resource/REPAIRtoire> | | "REPAIRtoire"@en | <http://dbpedia.org/resource/Systems_biology> | <http://dbpedia.org/resource/REPAIRtoire> | | "SPIKE"@en | "highly curated human signaling pathways."@en | <http://dbpedia.org/resource/Spike_%28database%29> | | "STRING"@en | "Search Tool for the Retrieval of Interacting Genes/Proteins"@en | <http://dbpedia.org/resource/STRING> | | "3"^^<http://www.w3.org/2001/XMLSchema#int> | "identification and classification of domain-based interactions of known three-dimensional structure."@en | <http://dbpedia.org/resource/3did> | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
list the databases available at the NCBI
Sparql query
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX dbpedia: <http://dbpedia.org/ontology/> SELECT ?title ?description ?uri WHERE { ?uri a <http://dbpedia.org/ontology/BiologicalDatabase> . ?uri <http://dbpedia.org/property/center> <http://dbpedia.org/resource/National_Center_for_Biotechnology_Information> . OPTIONAL { ?uri <http://dbpedia.org/property/title> ?title . } OPTIONAL { ?uri <http://dbpedia.org/property/description> ?description . } } ORDER BY ?title
Result:
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | title | description | uri | ======================================================================================================================================================================================================== | "BGMUT"@en | "database of variations in the genes that encode antigens of blood group systems"@en | <http://dbpedia.org/resource/BGMUT> | | "CDD"@en | "Conserved Domain Database for the functional annotation of proteins."@en | <http://dbpedia.org/resource/Conserved_domain_database> | | "GenBank"@en | "Nucleotide sequences for more than 300 000 organisms with supporting bibliographic and biological annotation."@en | <http://dbpedia.org/resource/GenBank> | | "NCBI Epigenomics"@en | "epigenomic data sets."@en | <http://dbpedia.org/resource/NCBI_Epigenomics> | | "Refseq"@en | "curated non-redundant sequence database of genomes."@en | <http://dbpedia.org/resource/RefSeq> | | "UniGene"@en | <http://dbpedia.org/resource/Transcriptome> | <http://dbpedia.org/resource/UniGene> | | "dbSNP"@en | <http://dbpedia.org/resource/Database> | <http://dbpedia.org/resource/DbSNP> | | "dbSNP"@en | <http://dbpedia.org/resource/Single-nucleotide_polymorphism> | <http://dbpedia.org/resource/DbSNP> | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
List the biological databases having a SPARQL endpoint
SPARQL query
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> SELECT ?uri ?endpoint WHERE { ?uri a <http://dbpedia.org/ontology/BiologicalDatabase> . ?uri <http://dbpedia.org/property/sparql> ?endpoint . }
Result:
------------------------------------------------------------------------------------ | uri | endpoint | ==================================================================================== | <http://dbpedia.org/resource/ChEBI> | <http://chebi.bio2rdf.org> | | <http://dbpedia.org/resource/ChEMBL> | <http://rdf.farmbio.uu.se/chembl/snorql/> | ------------------------------------------------------------------------------------That's It, Pierre
I wanted to create an entry called "cas9 genome editing" on Wikipedia, but I saw those unfamiliar with the template and gave up. After reading your article, I can finish the entry again.
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