Today I wrote an extension for
mediawiki displaying an HTML <iframe/> to the
UCSC Genome Browser. This extension will help my colleagues to annotate some candidate genes threw our local wiki.
This extension handles a new tag <ucsciframe> composed of three required parameters: 'chrom', 'start' and 'end'.
For example
<ucsciframe chrom="chr2" start="98987" end="9879899"/>
The source code for this extension is available at:
and its documentation is available on
www.mediawiki.org.
That's it !
Pierre
Great simple extension, thank you!
ReplyDeleteFor those wondering, it is very easy to be modified to be used for GMOD GBrowse as well.
For this I basically only had to change the url + formatting in myRenderUcscIFrame