YOKOFAKUN

Happy birthday my blog. You are now 10-year-old.

I've just pushed GATK-UI , a java swing interface for the Genome Analysis Toolkit GATK at https://github.com/lindenb/gatk-ui . This too...

This post is my notebook about docker after we had a very nice introduction about docker by François Moreews (INRIA/IRISA, Rennes) . I...

Some times ago, I've received a set of Ion-Torrent /mate-reads with a poor quality. I wasn't able to align much things using bwa. I...

After watching David Haussler's talk "Beacon Project and Data Sharing ApIs" , I wanted to play with Avro and the models and ...

"A MBean is a Java object that follows the JMX specification. A MBean can represent a device, an application, or any resource that nee...

The aim of this test is to get a count of each type of variant/genotypes in a VCF file using Apache Hadoop and the java library for NGS ht...

This is my notebook for the integration of java programs in https://usegalaxy.org/ . create a directory for your tools under ${galaxy-roo...

On friday, I saw my colleague @b_l_k starting writing SVG +XML code to draw a Manhattan plot . I told him that a better idea would be to ...

KNIME is a java+eclipse-based graphical workflow-manager. Biologists in my lab often use this tool to filter VCFs or other tabular data....