30 October 2014

Visualizing @GenomeBrowser liftOver/chain files using animated #SVG

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I wrote a tool to visualize some UCSC "chain/liftOver" files as an animated SVG file. This tool is available on github at: https...
16 October 2014

IGVFox: Integrative Genomics Viewer control through mozilla Firefox

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I've just pushed IGVFox 0.1 an add-on for Firefox, controlling IGV, the Integrative Genomics Viewer . This add-on allows the users to ...
30 September 2014

Using the Ensembl Regulatory Build to annotate some VCF files

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via UCSC Genome Browser project announcements : "Data from the Ensembl Regulatory Build are now available in the UCSC Genome Browser as...
1 comment:
08 September 2014

It's a kind of magic(5)

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The following question was recently asked on biostars.org : Tool that detects data types :" More specifically I am interested for detec...
1 comment:
03 September 2014

Parallelizing GNU #Make 4 in a #SLURM infrastructure/cluster

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SLURM ( https://computing.llnl.gov/linux/slurm/slurm.html ) is The Simple Linux Utility for Resource Management . It's an open source,...
1 comment:
08 August 2014

A GNU-make plug-in for the #Illumina FASTQs.

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The latest version of GNU-Make http://www.gnu.org/software/make/ provides many advanced capabilities, including many useful functions. How...
30 July 2014

writing #rstats bindings for bwa-mem, my notebook.

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I wanted to learn how to bind a C library to R , so I've created the following bindings for BWA . My code is available on github at : h...
1 comment:
29 July 2014

Including the hash for the current git-commit in a C program

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Say you wrote the following simple C program: It includes a file " githash.h " that would contain the hash for the current comm...
2 comments:
05 July 2014

Pushed : makefile2graph , creating a graph of dependencies from GNU-Make.

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I pushed makefile2graph at https://github.com/lindenb/makefile2graph . This is the standalone and 'C' implementation of a program I...
02 July 2014

Pushed today: verticalize , an everyday linux command to verticalize tab-delimited files

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FYI: this morning, I pushed verticalize on github. Verticalize is an everyday simple command to 'verticalize' delimited files: ht...
1 comment: