YOKOFAKUN

30 July 2014

writing #rstats bindings for bwa-mem, my notebook.

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I wanted to learn how to bind a C library to R , so I've created the following bindings for BWA . My code is available on github at : h...
1 comment:
29 July 2014

Including the hash for the current git-commit in a C program

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Say you wrote the following simple C program: It includes a file " githash.h " that would contain the hash for the current comm...
2 comments:
05 July 2014

Pushed : makefile2graph , creating a graph of dependencies from GNU-Make.

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I pushed makefile2graph at https://github.com/lindenb/makefile2graph . This is the standalone and 'C' implementation of a program I...
02 July 2014

Pushed today: verticalize , an everyday linux command to verticalize tab-delimited files

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FYI: this morning, I pushed verticalize on github. Verticalize is an everyday simple command to 'verticalize' delimited files: ht...
1 comment:
28 May 2014

Uniprot → SVG

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My colleague @Solena recently asked me to write a tool that would help her to prepare a large number of figures for an article. The tool I ...
22 May 2014

Breaking the " same origin security policy" with CORS. An example with @GenomeBrowser / DAS.

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Jerven Bolleman recently taught me about the CORS/Cross-origin resource sharing : @yokofakun we support the CORS header. I have not look...
20 May 2014

A nodejs-based REST server for the UCSC @GenomeBrowser

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Node.js provides a simple mechanism to write a REST server. As an exercise, I wrote a REST server for the mysql server of the UCSC genom...
15 May 2014

How I start a bioinformatics project

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Phil Ashton tweeted a link to a paper about how to set up a bioinformatics project file hierarchy: " A Quick Guide to Organizing Compu...
12 May 2014

Generating wikipedia semantic links from a pubmed-id

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In " Building a biomedical semantic network in Wikipedia with Semantic Wiki Links" (Database . 2012 Mar 20;2012) Benjamin Good ...
30 January 2014

Parallelizing #RStats using #make

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In the current post, I'll show how to use R as the main SHELL of GNU-Make instead of using a classical linux shell like 'bash...
1 comment:
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About Me

Pierre Lindenbaum
PhD virology, bioinformatics, genetics, science, geek, java, C++
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