YOKOFAKUN
26 September 2013
Presentation : File formats for Next Generation Sequencing
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Here is my presentation for the course " File formats for Next Generation Sequencing ", I gave monday at the University of Nantes....
Presentation: Advanced NCBI
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Here is my presentation for the course " Advanced NCBI ", I gave yesterday at the University of Nantes. Advanced NCBI from P...
10 September 2013
Building a simple & stupid LIMS with the Eclipse Modeling Framework (#EMF), my notebook.
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I played with the Eclipse Modeling Framework (EMF) and created a simple interface to manage a list of sequenced samples. I've upload...
26 July 2013
g1kv37 vs hg19
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In order to create a class to translate the chromosome names from one naming convention to another. I've compared the MD5 sums of the hu...
2 comments:
18 July 2013
Running a picard tool in the #KNIME workflow engine
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http://www.knime.org/ is "a user-friendly graphical workbench for the entire analysis process: data access, data transformation, initi...
Inside the Variation toolkit: annotating a VCF with the data of NCBI biosystems mapped to BED.
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Let's annotate a VCF file with the data from the NCBI biosystem . First the 'NCBI biosystem' data are mapped to a BED file usi...
15 July 2013
Playing with the "UCSC Genome Browser Track Hubs". my notebook
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The UCSC has recently created the Genome Browser Track Hubs : " Track hubs are web-accessible directories of genomic data that can be ...
12 July 2013
Inside the Variation Toolkit: Gene Ontology for VCF, GUI for VCF
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A quick note about three java-based tools for VCF files I wrote today. VcfViewGui VcfViewGui : a Simple java-Swing-based VCF viewer. VCF...
2 comments:
09 July 2013
Mapping the annotations of a query sequence on a BLAST hit, my notebook.
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This post is the answer to my own question on biostar " BLASTN / TBLASTN : mapping the features of the query to the hit. " . I wro...
15 June 2013
Dear editors,...
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Here is a screenshot of Thunderbird with the RSS feeds for "NCBI/pubmed: Exome Sequencing". I'm pretty sure that all that (se...
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