YOKOFAKUN

26 September 2013

Presentation : File formats for Next Generation Sequencing

›
Here is my presentation for the course " File formats for Next Generation Sequencing ", I gave monday at the University of Nantes....

Presentation: Advanced NCBI

›
Here is my presentation for the course " Advanced NCBI ", I gave yesterday at the University of Nantes. Advanced NCBI from P...
10 September 2013

Building a simple & stupid LIMS with the Eclipse Modeling Framework (#EMF), my notebook.

›
I played with the Eclipse Modeling Framework (EMF) and created a simple interface to manage a list of sequenced samples. I've upload...
26 July 2013

g1kv37 vs hg19

›
In order to create a class to translate the chromosome names from one naming convention to another. I've compared the MD5 sums of the hu...
2 comments:
18 July 2013

Running a picard tool in the #KNIME workflow engine

›
http://www.knime.org/ is "a user-friendly graphical workbench for the entire analysis process: data access, data transformation, initi...

Inside the Variation toolkit: annotating a VCF with the data of NCBI biosystems mapped to BED.

›
Let's annotate a VCF file with the data from the NCBI biosystem . First the 'NCBI biosystem' data are mapped to a BED file usi...
15 July 2013

Playing with the "UCSC Genome Browser Track Hubs". my notebook

›
The UCSC has recently created the Genome Browser Track Hubs : " Track hubs are web-accessible directories of genomic data that can be ...
12 July 2013

Inside the Variation Toolkit: Gene Ontology for VCF, GUI for VCF

›
A quick note about three java-based tools for VCF files I wrote today. VcfViewGui VcfViewGui : a Simple java-Swing-based VCF viewer. VCF...
2 comments:
09 July 2013

Mapping the annotations of a query sequence on a BLAST hit, my notebook.

›
This post is the answer to my own question on biostar " BLASTN / TBLASTN : mapping the features of the query to the hit. " . I wro...
15 June 2013

Dear editors,...

›
Here is a screenshot of Thunderbird with the RSS feeds for "NCBI/pubmed: Exome Sequencing". I'm pretty sure that all that (se...
‹
›
Home
View web version

About Me

Pierre Lindenbaum
PhD virology, bioinformatics, genetics, science, geek, java, C++
View my complete profile
Powered by Blogger.