26 July 2013

g1kv37 vs hg19

›
In order to create a class to translate the chromosome names from one naming convention to another. I've compared the MD5 sums of the hu...
2 comments:
18 July 2013

Running a picard tool in the #KNIME workflow engine

›
http://www.knime.org/ is "a user-friendly graphical workbench for the entire analysis process: data access, data transformation, initi...

Inside the Variation toolkit: annotating a VCF with the data of NCBI biosystems mapped to BED.

›
Let's annotate a VCF file with the data from the NCBI biosystem . First the 'NCBI biosystem' data are mapped to a BED file usi...
15 July 2013

Playing with the "UCSC Genome Browser Track Hubs". my notebook

›
The UCSC has recently created the Genome Browser Track Hubs : " Track hubs are web-accessible directories of genomic data that can be ...
12 July 2013

Inside the Variation Toolkit: Gene Ontology for VCF, GUI for VCF

›
A quick note about three java-based tools for VCF files I wrote today. VcfViewGui VcfViewGui : a Simple java-Swing-based VCF viewer. VCF...
2 comments:
09 July 2013

Mapping the annotations of a query sequence on a BLAST hit, my notebook.

›
This post is the answer to my own question on biostar " BLASTN / TBLASTN : mapping the features of the query to the hit. " . I wro...
15 June 2013

Dear editors,...

›
Here is a screenshot of Thunderbird with the RSS feeds for "NCBI/pubmed: Exome Sequencing". I'm pretty sure that all that (se...
09 June 2013

How to fit a sentence in a rectangle with the Hershey vectorial font.

›
via wikipedia : The Hershey fonts are a collection of vector fonts developed circa 1967 by Dr. A. V. Hershey (...). Vector fonts are easily ...
29 May 2013

Binding a C library with Javascript/ #mozilla. An example with the Tabix library

›
In this post I'll show how to bind a C API to javascript using the mozilla/xul-runner API and the tabix library. About xpcshell XULR...
26 May 2013

Filtering a VCF with javascript

›
This is my answer for that question on biostar . I wrote a java program filtering the VCF with the rhino javascript-engine. I put the cod...
1 comment: