YOKOFAKUN
29 November 2012
Reading/Writing a VCF file with the GATK-API.
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This is a simple post to save my notes about reading a VCF file and writing it to another file using the java libraries of the GATK . The on...
21 November 2012
visualizing the dependencies in a Makefile
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Update 2014: I wrote a C version at https://github.com/lindenb/makefile2graph . I've just coded a tool to visualize the dependencies in...
13 November 2012
Creating a virtual RDF graph describing a set of OpenOffice spreadsheets with Apache Jena and Fuseki
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In the current post, I will use the Jena API for RDF to implement a virtual RDF graph describing the content of a set of openoffice/libre...
02 November 2012
Saving your tweets in a database using sqlite, rhino, scribe, javascript
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In the current post, I 'll describe a simple method to save your tweets in a sqlite database using Mozilla Rhino . Prerequisites sqlite...
15 October 2012
Modifying the GATK so it supports a XML-based format for VCF.
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I've modified the sources of the GATK in order to support a XML-based format for the variation in addition of the VCF format. Here are...
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