YOKOFAKUN

13 July 2012

Parsing the Newick format in C using flex and bison.

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The following post is my answer for this question on biostar "Newick 2 Json converter" . The Newick tree format is a simple form...
4 comments:
10 July 2012

GNU C++ hash_set vs STL std::set: my notebook

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A set is a C++ container that stores unique elements. The C++ Standard Template library  (STL) defines a C++ template set<T> that is...
1 comment:
09 July 2012

Using the flickr XML/API as a source of RSS feeds.

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You may know that I seek from time to time royalty free pictures   on flickr.com for my other personal blog . The flickr API can be used ...
06 July 2012

The LZW compression algorithm as a measure of the short-reads complexity

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The LZW algorithm, is a dictionary-based universal lossless data compression algorithm. The algorithm is easy to implement, here is a pseud...
08 May 2012

Downloading the XML data from the Exome Variant Server

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From EVS : "The goal of the NHLBI GO Exome Sequencing Project (ESP) is to discover novel genes and mechanisms contributing to heart, lu...
4 comments:
24 April 2012

Mapping the genes involved in a category of disease: the GeneWikiPlus + SPARQL way.

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In my previous post , I've used the RDF/XML files of the Disease Ontology to map all the genes involved in a cardiac disease. Andrew...
13 April 2012

Using the Disease ontology (DO) to map the genes involved in a category of disease. My notebook

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In the current post, I'll use the disease ontology (DO) to map all the genes involved in a cardiac disease . Using The BioPortal , ...

I get mail: result of the contest "Draw a PhD Candidate"

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I recently submitted the following illustration for a contest organized by the French University of Nice : "Draw a PHD candidate"....
4 comments:
06 April 2012

Apache SOLR and GeneOntology: Creating the JQUERY-UI client (with autocompletion)

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In the previous post I showed how to use Apache SOLR to index the content of gene ontology . In this post I will show how the SOLR server ...
2 comments:

Indexing the content of Gene Ontology with apache SOLR

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Via Wikipedia: " Solr ( http://lucene.apache.org/solr/ ) is an open source enterprise search platform from the Apache Lucene project...
4 comments:
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About Me

Pierre Lindenbaum
PhD virology, bioinformatics, genetics, science, geek, java, C++
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