YOKOFAKUN

08 May 2012

Downloading the XML data from the Exome Variant Server

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From EVS : "The goal of the NHLBI GO Exome Sequencing Project (ESP) is to discover novel genes and mechanisms contributing to heart, lu...
4 comments:
24 April 2012

Mapping the genes involved in a category of disease: the GeneWikiPlus + SPARQL way.

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In my previous post , I've used the RDF/XML files of the Disease Ontology to map all the genes involved in a cardiac disease. Andrew...
13 April 2012

Using the Disease ontology (DO) to map the genes involved in a category of disease. My notebook

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In the current post, I'll use the disease ontology (DO) to map all the genes involved in a cardiac disease . Using The BioPortal , ...

I get mail: result of the contest "Draw a PhD Candidate"

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I recently submitted the following illustration for a contest organized by the French University of Nice : "Draw a PHD candidate"....
4 comments:
06 April 2012

Apache SOLR and GeneOntology: Creating the JQUERY-UI client (with autocompletion)

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In the previous post I showed how to use Apache SOLR to index the content of gene ontology . In this post I will show how the SOLR server ...
2 comments:

Indexing the content of Gene Ontology with apache SOLR

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Via Wikipedia: " Solr ( http://lucene.apache.org/solr/ ) is an open source enterprise search platform from the Apache Lucene project...
4 comments:
08 March 2012

My first walker for the GATK : my notebook

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This is my first notebook for developping a new Walker for the Genome Analysis Toolkit . This post was mostly inspired by the following pdf...
1 comment:
04 March 2012

Java Remote Method Invocation (RMI) for Bioinformatics

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"Java Remote Method Invocation (Java RMI) enables the programmer to create distributed Java technology-based to Java technology-based ...
31 January 2012

Inside the Variation Toolkit: Tools for Gene Ontology

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GeneOntologyDbManager is a C++ tool that is part of my experimental Variation Toolkit . This program is a set of tools for GeneOntology , ...
28 January 2012

Inside the variation toolkit: VCF2XML

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vcf2xml is C++ tool that is part of my Variation Toolkit . It transforms a "Variant Call Format document" to XML , so it can be ...
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About Me

Pierre Lindenbaum
PhD virology, bioinformatics, genetics, science, geek, java, C++
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