YOKOFAKUN
31 July 2011
Storing some SNPs using the leveldb library. My notebook.
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In this post I'll describe how I've used the leveldb API , a C++ key-value database, to store some SNPs (key=rs,value=sequence). ...
1 comment:
27 July 2011
Controlling IGV through a Port: my notebook.
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A protocol for interacting with the The Integrative Genomics Viewer (IGV) is described here: http://www.broadinstitute.org/igv/PortCommands ...
3 comments:
26 July 2011
A mysql full-text parser searching for some SNPs
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A mysql full-text parser server plugin can be used to replace or modify the built-in full-text parser. This post a full-text parser plugin ...
25 July 2011
The samtools C API: creating a WIG file for the genome coverage
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I wrote a tool which uses the samtools API to generate a WIG file for the genome coverage. This tool, bam2wig , as well as some other tool...
20 July 2011
Drawing a SVG timeline with the http://data.bnf.fr data
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The National French Library has recently started to release its data as RDF/XML. Here, I've played with the biographies of the famous F...
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