YOKOFAKUN

07 January 2011

SVG image in wikipedia + Zoom.it =a Zoomable "Tree of life"

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Zoom.it is a free service for viewing and sharing high-resolution imagery. You give us the link to any image ( including SVG, pdfs) on the ...
05 January 2011

Template:Infobox biodatabase

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I've just started creating a wikipedia infobox to annotate the biological databases in wikipedia . If many articles use this template, ...
4 comments:

Coding a CXF web service translating a DNA to a protein. My notebook

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Apache CXF is a Web Services framework. In this post, I'll will describe how I implemented a Web Service translating a DNA to a protein...

Don't mask this sequence, please.

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I recently asked on Biostar if it would be worth to mask the non-genic sequence before aligning the short reads on the reference after an e...
01 January 2011

My tool to annotate VCF files.

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The Variant Call Format is a text file format generated by many tools for NGS. It contains meta-information lines, a header line, and then ...
16 comments:
31 December 2010

Translating a DNA to a Protein using server-side javascript and C: my notebook

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In my previous post , I used Node.js to translate a DNA to a protein on the Server-side, using javascript . In the following post, I again...

Server-side javascript: translating a DNA with Node.js

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( wikipedia ) Node.js is an evented I/O framework for the V8 JavaScript engine on Unix-like platforms. It is intended for writing scalabl...
1 comment:
14 December 2010

Looking for an expert ?

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Yesterday, Andrew Su asked on Biostar : "Given a gene, what is the best automated method to identify the world experts? " . Here...
1 comment:
13 December 2010

A new journal: BMC Open Research Computation #OpenResComp

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www.openresearchcomputation.com Citing ''Aims & scope'': Open Research Computation publishes peer reviewed articles that...
3 comments:
17 November 2010

BLAST/XML+Annotations

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I recently asked on Biostar if it would be possible to align two sequences while displaying their respective annotations. As both answers I...
2 comments:
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About Me

Pierre Lindenbaum
PhD virology, bioinformatics, genetics, science, geek, java, C++
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