27 October 2010

Coloring a black and white drawing with the GIMP: my notebook

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I've been kindly asked to draw a proposal for the cover of http://www.cell.com/immunity (It's just a project and I'm not sure i...
3 comments:
24 October 2010

Where are the alternative reading frames in the Human Genome ?

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The following post was inspired by a question asked recently on Biostar : "Do exons ever have different reading frames in spliced vari...
11 October 2010

A custom JSP tag for mediawiki

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I'm pretty happy with the following custom JSP tag for mediawiki I wrote last week ( http://code.google.com/p/code915/source/browse/tr...

Playing with the Wordle algorithm: a tag cloud of Mesh Terms

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The paper describing Wordle has been recently published ( http://www.research.ibm.com/visual/papers/wordle_final2.pdf ). The algorithm was...
3 comments:
10 October 2010

The Geek is dead. Long live the Geek :-)

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congratulations to Neil! ;-) frameborder="0" scrolling="no" width="210px" height="60px">...
4 comments:
24 September 2010

Connecting to a MongoDB database from R using the C API for MongoDB

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Today, Neil posted an article titled" Connecting to a MongoDB database from R using Java ". In the current post, I'll show ho...
1 comment:
22 September 2010

A Simple tool to get the sex ratio in pubmed.

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Just for fun, I wrote a simple java tool to get the sex ratio of the authors in Pubmed . This program fetches a list of names/genders I foun...
4 comments:
21 September 2010

Trees in Mongodb, my notebook with Gene Ontology

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In the current post I've loaded the Gene Ontology into MongoDB and played with the tree structure of the database: Loading GeneOntolog...
19 September 2010

Indexing some genomic positions with MongoDB: my benchmark

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The aim of this post was to find a good way to index some genomic positions with mongodb . ( Update: it was tested on my laptop without rep...