YOKOFAKUN

In the following post, I will show how I've implemented a custom C function for R . This C function will translate a DNA to a protein. ...

Thanks to Neil , I've discovered that Biomart was not just a web interace, it also contains a powerful API: Citing http://www.biomart.o...

"The Factory method pattern defines a separate method for creating the objects, which subclasses can then override to specify the deri...

Just In Case You Don't Know: Biostar is a site running the StackExchange engine (the same engine used by http://stackoverflow.com ). T...

largely inspired by Wikipedia: " Builder Pattern is a software design pattern. The intention is to abstract steps of construction of o...

In the very next posts, I'll post my notes about the " Design Patterns ". A Design Pattern is a "general reusable solutio...

In this post I'll create a Mysql Defined function (UDF) answering if a defined GO term is a descendant of another term. This post is n...

In a previous post , I've played with Oracle's BerkeleyDB-XML . Here, I used with eXist-db , an open source database management syst...

neo4j "Neo4j is a graph database. It is an embedded, disk-based, fully transactional Java persistence engine that stores data structur...

At Biohackathon2010 , Mark Wilkinson and Luke McCarthy introduced The SADI Framework . From sadiframework.org : SADI is a framework for ...