YOKOFAKUN

21 May 2009

XML Pipelines/ XProc for bioinformatics: my notebook

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In this post I describe how I used XProc , the XML "pipeline language" to create a workflow of XML data calling the NCBI for some ...
3 comments:
20 May 2009

XForms for Bioinformatics : my notebook.

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Here, I describe my experience with XFORMS :( W3C ) XForms is an XML application that represents the next generation of forms for the Web. B...
18 May 2009

Rare Disease: How-to ?

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I had a conversation with a colleague about how to study a gene involved in a rare human lethal disease. A set of mutations in this gene fav...
3 comments:
14 May 2009

WebServices/JAXWS for SNP, Glassfish, Taverna: my notebook

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In this post I describe how to deploy a WebService in the GlassFish web server and to to use it via the Taverna workflow engine. Server s...
01 May 2009

Beautiful Data : The Stories Behind Elegant Data Solutions

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My contribution to this book was minor, so I really want to thank Jean Claude Bradley , Rajarshi Guha , Andrew Lang , Cameron Neylon , Anto...
1 comment:
29 April 2009

CouchDB for Bioinformatics: Storing SNPs - My Notebook

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In a previous post, I've been playing with Apache Hadoop . I've encountered some technical difficulties with Hadoop (such as the sim...
6 comments:
23 April 2009

A Tag Cloud for my Resume.

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I'm revising my CV as I'll move to Nantes and I wanted to create a Tag Cloud to illustrate my resume. Paul and Richard suggested...
4 comments:
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About Me

Pierre Lindenbaum
PhD virology, bioinformatics, genetics, science, geek, java, C++
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