YOKOFAKUN

29 April 2009

CouchDB for Bioinformatics: Storing SNPs - My Notebook

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In a previous post, I've been playing with Apache Hadoop . I've encountered some technical difficulties with Hadoop (such as the sim...
6 comments:
23 April 2009

A Tag Cloud for my Resume.

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I'm revising my CV as I'll move to Nantes and I wanted to create a Tag Cloud to illustrate my resume. Paul and Richard suggested...
4 comments:
21 April 2009

Hadoop, my notebook: HDFS

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This post is about the Apache Hadoop , an open-source algorithm implementing the MapReduce algorithm. This first notebook focuses on HDFS,...
10 April 2009

Resolving LSID: my notebook

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This post is about LSID ( The Life Science Identifier ) and was inspired by the recent activity of Roderic Page on Twitter and by Roderic...
1 comment:

XML to DOM using XSLT

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A short post. I was fed up with writing javascript/java code for creating dynamic web interfaces ( You know all those document.createElement...
06 April 2009

Go West !

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After one year at the Center for the Study of Human Polymorphisms I will follow my wife in Nantes (France) on September 1st 2009. Hum... t...
03 April 2009

Consequences : SNP, cDNA, proteins, etc....

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This post is about Consequences , a tool finding the consequences of a set of mutations mapped on the human genome. It was motivated by a re...
12 March 2009

A few nightmares before biohackathon 2009.

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OK, after Scifoo 2007 ( http://plindenbaum.blogspot.com/2007/07/scifoo-07-anxiety-from-homebody.html ). Here are my apprehensions for BioHac...
1 comment:

My notebook for a Stupid RDF Server

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In this post, I'm writing my notes about the java package com.sun.net.httpserver.* . This package contains a lightweight HTTP server and...
07 March 2009

A lightweight java parser for RDF

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About one year ago, I wrote a lightweight java parser for RDF based on the Stream API for XML (Stax). It is far from being perfect as , fo...
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About Me

Pierre Lindenbaum
PhD virology, bioinformatics, genetics, science, geek, java, C++
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