19 December 2006

CiteXplore – integrating biomedical literature and data

›
Via Prosper : CiteXplore combines literature search with text mining tools for biology. Search results are cross referenced to EBI applicat...
15 December 2006

JAVA 1.6 Mustang, Derby/JavaDB and Bioinformatics.

›
Java1.6 nows contains an embedded SQL database engine called derby . In this post I will show how I have tested derby to store some fasta s...

JAVA 1.6 Mustang, StAXand Bioinformatics

›
about StAX via xml.com ; Most current XML APIs fall into one of two broad classes: event-based APIs like SAX and XNI or tree-based APIs li...

JAVA 1.6 Mustang, JAXB and Bioinformatics

›
JAXB provides a convenient way to bind an XML schema to a representation in Java code. It makes it easy for you to incorporate XML d...
13 December 2006

JAVA 1.6 Mustang , Scripting and Bioinformatics.

›
Java 1.6 has been released and it is now open source . Among the new features of java, there is an embedded sql engine and a scripting eng...
06 December 2006

Visual Pipeline Editor (Continued)

›
Following my post about amatea , Egon has suggested me to have a look at two softwares: KNIME : KNIME is a modular data exploration platfo...
04 December 2006

Visual Unix Pipeline

›
A few days ago I was presented a really impressive demo of Amadea . In a simplistic view, it looks like a "visual unix pipeline":...
1 comment:
30 November 2006

Social Network: Vidaeo

›
Vidaeo is the new name of the largest French social network previously known as Viaduc . The new site speaks English and is now open to eve...

Proteins@Home

›
Proteins@Home , a large-scale protein structure prediction project , is now open for beta-testing. Proteins@Home is based on BOINC , a prog...
23 November 2006

www.oboedit.org

›
Via : GO friends OBO-Edit, the open source ontology editor written in Java. OBO-Edit is optimized for the OBO biological ontology file form...