YOKOFAKUN

Showing posts with label vcf. Show all posts
Showing posts with label vcf. Show all posts
15 January 2017

Creating a custom GATK Walker (GATK 3.6) : my notebook

›
This is my notebook for creating a custom engine in GATK. Description I want to read a VCF file and to get a table of category/count. So...
04 March 2016

Now in picard: two javascript-based tools filtering BAM and VCF files.

›
SamJS and VCFFilterJS are two tools I wrote for jvarkit . Both tools use the embedded java javascript engine to filter BAM or VCF file. ...
1 comment:

Reading a VCF file faster with java 8, htsjdk and java.util.stream.Stream

›
java 8 streams "support functional-style operations on streams of elements, such as map-reduce transformations on collections". I...
›
Home
View web version

About Me

Pierre Lindenbaum
PhD virology, bioinformatics, genetics, science, geek, java, C++
View my complete profile
Powered by Blogger.