YOKOFAKUN

I've been asked to look for some new / suspected / previously uncharacterized intron-exon junctions in public RNASeq data. I've use...

Some times ago, I've received a set of Ion-Torrent /mate-reads with a poor quality. I wasn't able to align much things using bwa. I...

I've recently read some conversations on Twitter about Makefile-based bioinformatics workflows . I've suggested on biostars.org ( St...

Rule 3 of "Ten Simple Rules for Reproducible Computational Research" . is : Archive the Exact Versions of All External Programs U...

The following question was recently asked on Biostar " Bioinformatics: how to version control small scripts located all over the serve...

BWA-MEM , is a new tool that is part of the latest version of BWA . As said Heng Li on Biostar bwa-mem can be used to identify the viral in...

In the current post, I'll describe my first Open MPI program. Open MPI is "a Message Passing Interface (MPI) library, a standard...

Many tools in the Picard package produce some "Metrics File" (described at http://picard.sourceforge.net/picard-metric-definiti...

I've forked samtools and modified the code of tview to use it as a library to display the alignments. The original code is an inreracti...