Showing posts with label ontology. Show all posts
Showing posts with label ontology. Show all posts
09 January 2013

A XML schema (xsd) for GeneOntology

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The GeneOntology can be downloaded as a RDF/XML file from http://archive.geneontology.org/latest-termdb/go_daily-termdb.rdf-xml.gz . Althou...
20 December 2012

RDF/Jena: a simple extension for XSLT/XALAN. Testing with NCBI-Gene

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In a previous post , I've shown that the XALAN XSLT engine can be extended with custom function returning a DOM Document that will be ...
27 August 2012

Reasoning with the Variation Ontology using Apache Jena #OWL #RDF

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The Variation Ontology (VariO), "is an ontology for standardized, systematic description of effects, consequences and mechanisms of va...
24 April 2012

Mapping the genes involved in a category of disease: the GeneWikiPlus + SPARQL way.

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In my previous post , I've used the RDF/XML files of the Disease Ontology to map all the genes involved in a cardiac disease. Andrew...
13 April 2012

Using the Disease ontology (DO) to map the genes involved in a category of disease. My notebook

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In the current post, I'll use the disease ontology (DO) to map all the genes involved in a cardiac disease . Using The BioPortal , ...
31 January 2012

Inside the Variation Toolkit: Tools for Gene Ontology

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GeneOntologyDbManager is a C++ tool that is part of my experimental Variation Toolkit . This program is a set of tools for GeneOntology , ...
01 August 2011

Using the Freebase and the Bioportal Widgets to create a semantic object.

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The following HTML code uses: a Widget from the NCBO Bioportal for the Protein-protein interaction Ontology And two Widgets from Freebase ,...
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11 June 2009

Learning OWL: a simple Ontology for contributions

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This post is a simple reminder for creating a simple OWL ontology, I know RDFS (RDF schema) but I'm not at all an expert with the OWL l...
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