tag:blogger.com,1999:blog-14688252.post9059344805177847374..comments2024-02-16T10:17:12.310+01:00Comments on YOKOFAKUN: Inside Jvarkit: Shrink your fastqs by 40% by aligning them to REF before compression.Pierre Lindenbaumhttp://www.blogger.com/profile/13765837643388003852noreply@blogger.comBlogger2125tag:blogger.com,1999:blog-14688252.post-56965283164905953502013-11-21T17:54:52.656+01:002013-11-21T17:54:52.656+01:00reads are mapping the same part of the genomes: th...reads are mapping the same part of the genomes: the compressor finds more similar strings to index. See: http://www.quora.com/Data-Compression/How-does-file-compression-workPierre Lindenbaumhttps://www.blogger.com/profile/13765837643388003852noreply@blogger.comtag:blogger.com,1999:blog-14688252.post-22569877143631162512013-11-21T17:49:59.394+01:002013-11-21T17:49:59.394+01:00Hi Pierre,
I'm not sure I understand how this...Hi Pierre,<br /><br />I'm not sure I understand how this work. Does having reads with similar sequence in close proximity in the file allow the compression to be more efficient?Frogeehttps://www.blogger.com/profile/10185110445452841092noreply@blogger.com